Insights into Neurodegenerative Diseases using Transcriptomics Datasets A re-analysis of the similarities and differences between Alzheimer’s disease and Parkinson’s disease. Published on June 27th, 2023By Axel Martinelli What are Neurogenerative …
RNA-seq transcriptome analysis of the anti-inflammatory effect of artesunate on cerebral malaria Published on April 25th, 2023⏱ 11 min read RE-ANALYSIS Cerebral malaria is the main cause of death in …
How to convert FASTQ files into read count tables using Galaxy Published on August 2nd, 2022 by Axel Martinelli This short guide is meant for biologists with little or no …
Browsing through the most recent proteomics dataset on the public PRIDE database, I came across this study (PXD033148) from Wang and colleagues at Xiangya Hospital of Central South University in …
The Role of Osteopontin on Prostatic Fibrosis and Inflammation Published on January 19th, 2022 by Axel Martinelli For this post, I will re-analyse the transcriptomic data from a recently published …
The original article by Stilling et al (2018), described the association between gut microbiome composition and social behaviour in mice. They compared the social interaction of germ-free mice (GF, devoid …
The analysis of omics data involves the collaboration of biologists and bioinformaticians. They need each other to generate the data and analyse it. Biologists have a deep understanding of the …
The Genotype-Tissue Expression program (GTEx) is an extensive collection of gene expression profiles from 54 different tissue sites across more than 1000 individuals. This data can provide various insights on …
IL-17A as a possible therapeutic target for Osteoarthritis Published on July 8th, 2021by Axel Martinelli For this brief article, I have decided to re-analyse the RNA-seq data from a recently …
Amidst the talks of personalised medicine, it is easy to forget that cheap large-scale genome sequencing is a recent phenomenon that started in the early 2000’s with the development of …
