Streamlined Proteomics and Transcriptomics Data Analysis for Drug Discovery in Oncology Analyze omics data and explore biomarkers and pathways with no coding expertise required. Download the case study Try Omics …
Key Challenges in Multi-Omics Data Integration Published on October 21, 2025Written by Antonino Zito 10 min read Introduction Multi-omics data integration aims to harmonize multiple layers of biological data, such …
BigOmics Analytics Successfully Completes the First Tranche of its Next Round to Fast-track Omics Data Analysis and Unlock Precision Medicine Lugano, October 8, 2025 – BigOmics Analytics, a Swiss bioinformatics …
The Ultimate Guide to Public RNA-Seq and single-cell RNA-Seq Databases: a Comparative Review Last updated on September 2025 13 min read Introduction The wealth of publicly available RNA-sequencing (RNA-seq) and single-cell …
Introduction to WGCNA: Applications in Gene Correlation Network Analysis Published on October 2, 2025 by Antonino Zito 10 min read Introduction Weighted gene co-expression network analysis (WGCNA) is a powerful all-in-one …
Using Omics Playground to Analyze Olink Proteomic Data Published on August 6th, 2025 3 min read Introduction Olink Target proteomics data are protein measurements obtained using Olink’s Proximity Extension Assay …
Efficient Single-Sample Gene Set Enrichment Scoring Methods for Large-Scale Datasets Published on July 23, 2025Written by Antonino Zito⏱ 4 min read The prominent problem of scalable single sample gene set …
Combining Multi-Omics Factorization Methods for Robust Biomarker Identification Written by Ivo Kwee⏱ 5 min read Introduction Multi-omics biomarker identification is crucial for advancing biomedical research and personalized medicine. Computational genomic …
Preprocessing of MS-based Proteomics Data: Overview and Software Options Published on April 23nd, 2025Written by Shujia Dai, Ph.D⏱ 12 min read Introduction to Proteomics Data Preprocessing Mass spectrometry (MS)-based proteomics …
USE CASE From Raw Data to Therapeutic Insights: End-to-End RNA-Seq Analysis of IL-17A in Osteoarthritis Written by Axel Martinelli in collaboration with Almaden Genomics. Introduction In 2021 Mimpen et al. …
How to Identify Biomarkers:Definition, Examples, and Algorithms for Detection How to Identify Biomarkers: Definition, Examples, and Algorithms for Detection ⏱ 9 min readby Axel Martinelli Introduction Novel biomarker discovery is crucial …
In this article, we give an overview of why RNA-seq normalization is essential, and we break down different RNA-seq normalization methods to help you master your next RNA-seq analysis.
A Short Guide to Enrichment Analysis by Ivo Kwee, CTO Enrichment Analysis (EA), or also called Gene Set Analysis (GSA), is a computational method used to analyze gene expression data …
Advancing Cancer Therapeutics: Synergizing mTOR Inhibitors with STL001’s Enhanced Modes of Action and Tetrandrine Potential Written by Axel Martinelli in collaboration with Lexogen⏱ 6 min read FOXM1, a transcription factor …
Proteomics Normalization: Methods and How to Choose the Best One for Your Data A guide to proteomics normalization and methods involved to get the most out of your analysis Published …
How to Analyze Proteomics Data Using Omics Playground Steps involved in the analysis, statistical methods applied and suggested analyses to visually interpret your proteomics data. Published on December 23rd, 2024⏱ …
Insights into Aging from the GTEx Tissue Collection Exploring Biomarkers of Aging and Aging Pathways Written by Axel Martinelli⏱ 9 min read Last updated on December 6th, 2024Published on August …
How to Perform Differential Gene Expression Analysis Steps in analyses of gene expression data and popular differential gene expression analysis methods Published on January 30th, 2024 by Antonino Zito, PhD ⏱ 6 …
What are Batch Effects in Omics Data and How to Correct Them The Tricky Problem of ‘Batch Effects’ in Biological Data Published on March 8th, 2024Last updated on November 12th, …
What’s New in Omics Playground V3.5: A Complete Guide to the Latest Features Published on November 12th, 2024⏱ 13 min read Introduction We are thrilled to announce the latest release of …
Top Pharmacogenomics Databases for Drug Discovery Published on November 8th, 2024⏱ 4 min read Introduction Pharmacogenomics databases are indispensable resources for drug discovery and development. These databases compile extensive datasets on …
Reanalyzing Olink Proteomics Data with Omics Playground: Uncovering Therapeutic Drug Potential for Sarcoidosis Published on October 14th, 2024by Axel Martinelli ⏱ 5 min read Introduction Omics Playground supports a wide …
How to Prepare your RNA-Seq and Proteomics data for Omics Playground Last updated on December 13th, 2024First Published on February 22nd, 2023⏱ 9 min read Omics Playground is a cloud-based …
How to Upload Your RNA-Seq and Proteomics Data to Omics Playground Step-by-step tutorial Last Updated on December 10th, 2024Published on February 5th, 2024⏱ 13 min read Introduction In this step-by-step guide, …
Fast and Flexible Omics Data Analysis for Proteomics Research in Oncology Download the case study Client Profile The Section for Translational Surgical Oncology and Biomaterial Banks at the University of …
Biomarker Data Analysis with Omics Playground: A Step-by-Step Tutorial Published on June 3rd, 2024 Written by Axel Martinelli ⏱ 9 min read Introduction In this biomarker data analysis tutorial, we will guide …
Achieving End-to-End Omics Data Analysis and Facilitating Interactive Results Sharing in Sequencing Units Published on March 28th, 2024by Murat Akhmedov ⏱ 12 min read Introduction I recently had the opportunity to …
Fast, Flexible and Creative Omics Data Analysis for Cancer Drug Discovery ✅ Rapid data retrieval and reanalysis. ✅ Efficient Biomarker Identification ✅ Simplified insight extraction Download the case study Request …
Beyond Basic Transcriptomics Data Analysis: How to Extract the Most Information from Your Data 7 approaches for your transcriptomics data analysis to get the most out of your experiments. Published …
BigOmics and Almaden Genomics Collaborate to Provide End-to-End Omics Data Analysis Published on February 22nd, 2024⏱ 3 min read LUGANO, Switzerland – February 22nd, 2024 – BigOmics Analytics has announced its …
Unleashing the Power of httpOnly Cookies in R Shiny Applications A Comprehensive Guide Published on February 20th, 2024Written by Xavier Escribà Montagut, Software engineer ⏱ 13 min read What’s In Store? …
Three Shades of Bioinformatics Analysis: Full Service, Self-Service, Governed Self-Service Analytics The Role of Omics Data Analysis Solutions in Bioinformatics Analysis Published on February 6th, 2024 by Murat Akhmedov, CEO ⏱ 9 …
Omics Data Analysis Software as an Educational and Training Tool Omics Playground: Your Essential Solution for Data Analysis Training and Publication Reviewing Published on January 16th, 2024⏱ 5 min read Introduction …
What causes missing values in proteomics (and metabolomics) and how to assess several imputation methods.
Omics Playground V3:A Fresh Look and Exciting New Features Published on December 14th, 2023⏱ 9 min read Introduction We’re excited to announce the release of Version 3 of Omics Playground. As …
Three Main Challenges in Omics Data Analysis and the Future of Bioinformatics – Interview with Ming Tommy Tang Published on December 12th, 2023⏱ 9 min read Introduction There are several challenging …
Common Bioinformatics Data Analysis Mistakes Checklist of errors to avoid and recommendations for successful bioinformatic data analysis. Published on November 20th, 2023⏱ 9 min read Introduction In this blog article, we …
The Landscape of Bioinformatics Tools and the Importance of Interoperability for “End-to-end” Omics Data Analysis Published on November 20th, 2023 by Murat Akhmedov, CEO⏱ 9 min read Introduction Omics experiments involve …
Exploring Omics Playground: A Computational Biologist’s Evaluation Published on Nov 8, 2023Written by Murat Akhmedov, CEO ⏱ 8 min read I recently had the opportunity to interview Jonathan Landry, a computational …
The Evolution of Biodata Analysis and Visualization From Script to Reports to Interactive Dashboards Published on October 31st, 2023 Written by Murat Akhmedov, CEO⏱ 9 min read Introduction The enormous amounts …
Common Mistakes in Omics Experimental Design for Biologists Published on October 18th, 2023Written by Axel Martinelli⏱ 5 min read Introduction Scientists frequently make mistakes in experimental design. The good news …
Top RNA Seq Service Providers for Your Experiment Top CROs, their role in RNA-Seq data generation and how to choose the right one for your RNA-Seq experiment. Published on September …
Enabling Omics Data Analysis at Scale Bioinformatics Support to Understand Human Immunology Download the case study Goal The Institute for Research in Biomedicine (IRB) in Bellinzona stands out as an …
Accelerating Drug Repurposing with Intuitive and Easy-To-Use Omics Data Analytics Using Human Brain Organoids for Drug Screening. Download the case study Goal A leading interdisciplinary research institute in Boston with …
Build or Buy: Big Data Challenges in Omics Data Analysis Advantages and disadvantages of developing an in-house solution versus buying commercial bioinformatics omics tools for biotech and pharma companies. Published …
DNAnexus and BigOmics Analytics Join Forces to Improve Proteomics and Transcriptomics Data Visualization and Interpretation Published on August 2nd, 2023by BigOmics Complete collaborative environment with intuitive interface addresses common analysis …
Revolutionizing Novel Cancer Drug Discovery with Flexible, Trusted and User-Friendly Omics Data Analysis Download the case study Request a demo Goal Valerio Therapeutics is a clinical-stage biotechnology company developing novel …
Advances in Parkinson’s Disease Research and Michael J. Fox’s Story Published on July 4th, 2023by Axel Martinelli, PhD ⏱ 7 min read Neurodegenerative Diseases – Can They Be Eradicated in Our …
Comparative analysis and Identification of Therapeutic Targets for Neurodegenerative Diseases: a Re-Analysis Learn about the similarities and differences between Alzheimer’s disease and Parkinson’s disease and how to identify therapeutic targets …
The Application of RNA-Seq and Proteomics in Cancer Research Published on June 20th, 2023by Axel Martinelli, PhD ⏱ 5 min read Introduction Pharmaceutical companies are under intense pressure to succeed in …
Revolutionary Cancer Research Breakthroughs The impact of RNA-seq and Proteomics technologies in advancing cancer treatments, improving therapies and driving cancer research breakthroughs. Published on June 6th, 2023by Axel Martinelli, PhD …
RNA-seq transcriptome analysis of the anti-inflammatory effect of artesunate on cerebral malaria Re-Analysis Published on April 25th, 2023by Axel Martinelli, PhD ⏱ 11 min read Introduction to the Cerebral Malaria …
9 factors you should consider when choosing RNA-seq analysis and visualization software Published on April 20th, 2023 by BigOmics ⏱ 11 min read Commercial RNA-seq data analysis software allows researchers, biotechnology, …
How to Convert FASTQ Files Into Read Count Tables Using Galaxy Published on August 2nd, 2022 by Axel Martinelli This short guide is meant for biologists with little or no …
Omics data is becoming ubiquitous both in biological and, increasingly, medical research. Rapid developments in reagents, sequencing technologies and analysis are constantly pushing down costs while increasing the amount of …
Profilin 1 and its role in proteasome inhibitors resistance Published on May 19th, 2022Written by Axel Martinelli⏱ 2 min read Introduction Browsing through the most recent proteomics dataset on the …
Lugano, March 17, 2022 – BigOmics Analytics, a Swiss biodata analytics startup, announces raising additional funding from Eppendorf, a leading life science company that develops and sells instruments, consumables and …
The Role of Osteopontin on Prostatic Fibrosis and Inflammation Re-analysis of an RNA-Seq dataset looking at the osteopontin function in prostate fibrosis and identifying potential therapeutic targets Last updated on …
Remix Therapeutics is a Boston-based biotechnology company developing novel small molecule therapies for reprogramming RNA processing and treating disease in entirely new ways. As protein targeting therapies reach the limits …
Bellinzona, Switzerland, December 10, 2021 – BigOmics Analytics SA (“BigOmics”), a Swiss biodata analytics startup, announced today that it raised a total of $1.85 million in financing. This funding will …
We are excited to announce that we are exhibitors at the BioData & Genomics Live World Congress in Basel. BioData World covers big data in pharmaceutical development and healthcare. Genomics …
The Role of the Microbiome on Social Interactions in Mice: RNA-Seq Data Analysis Last updated on December 6th, 2024Published on October 21st, 2021Written by Axel Martinelli⏱ 9 min read Introduction The …
Bioinformatic Platforms: Bridging the Gap Between Biologists and Bioinformaticians Written by Axel Martinelli Last updated on December 13, 2024Published on August 26, 2021⏱ 5 min read Introduction The analysis of …
We are excited to announce that BigOmics will be sponsoring the BC2 conference that will take place at the Congress Center Basel and online from 13 – 15 September 2021. …
RNA-Seq Data Re-Analysis Glucocorticoid Resistance in Multiple Myeloma Withaferin A and BTK Inhibitors: Analyzing Drug Resistance Mechanisms in Multiple Myeloma Dataset Written by Axel MartinelliLast updated on December 13th, 2024Published …
In-house or out-house: Is it time to outsource bioinformatics? Exploring how commercialization can address the challenges faced by bioinformatics in academia, while paving the way for more efficient and specialized …
About BigOmics BigOmics Analytics is a Swiss biodata intelligence startup that aims to disrupt the way of analytics in digital health. At BigOmics, we strive for the vision of data-driven …
Omics Playground 4 – The Newest Key Features Discover the key features available in the new beta version of Omics Playground. Published on May 20, 2025. Introduction The beta version …
