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Category: Case study

Differentially expressed proteins in the KEGG proteasome pathway following PFN1 overexpression.
Case study

Profilin 1 and its role in proteasome inhibitors resistance

Browsing through the most recent proteomics dataset on the public PRIDE database, I came across this study (PXD033148) from Wang and colleagues at Xiangya Hospital of Central South University in …

Case study

The Role of Osteopontin on Prostatic Fibrosis and Inflammation

For this post, I will re-analyse the transcriptomic data from a recently published article on the role of osteopontin on prostatic fibrosis and inflammation (Popovics et al, 2021). Fibrosis occurs …

Case study

The role of the microbiome on social interactions in mice

The original article by Stilling et al (2018), described the association between gut microbiome composition and social behaviour in mice. They compared the social interaction of germ-free mice (GF, devoid …

Aging Insights from the GTEx Tissue Collection
Case study

Insights into Aging from the GTEx Tissue Collection

The Genotype-Tissue Expression program (GTEx) is an extensive collection of gene expression profiles from 54 different tissue sites across more than 1000 individuals. This data can provide various insights on …

Case study

IL-17A as a possible therapeutic target for Osteoarthritis

For this brief article, I have decided to re-analyse the RNA-seq data from a recently published paper on the osteoarthritis-like (OA-like) transcription changes induced in response to Interleukin-17 (IL-17) (Mimpen …

Case study

Glucocorticoid Resistance in Multiple Myeloma: a Dataset Re-analysis

For this post, I decided to re-analyse a dataset from a recent article by Logie et al (2021) using our Omics Playground platform. Multiple Myeloma (MM) is a malignancy that …

Case study / Tutorial

Part I: Re-analysis of the first public SARS-CoV-2 transcriptomics data from Blanco-Melo et. al.

Do you work with COVID-19 related transcriptomic data? Then re-analyse the first public transcriptomic data from Blanco-Melo lab at covid19.bigomics.ch on your own in a few minutes The first public …

Case study / Tutorial

Finding Potential Biomarkers And Therapeutic Drugs With Coronavirus Datasets (Part 2)

In a previous post, Axel Martinelli analysed an in vitro infection with a Middle Eastern coronavirus using our special edition of the Omics Playground platform. In that analysis he identified the SSX2 gene as a potential …

Case study / Tutorial

Finding Potential Biomarkers And Therapeutic Drugs With Coronavirus Datasets (Part 1)

Our company, Bigomics Analytics, recently launched the Viromics Playground, an open access online version of the Omics Playground platform that includes over 200 viral infection transcriptomes. I thought it might …

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Easily visualize and interact with your #RNASeq and #proteomics data with Omics Playground. Try it now at ➡ https://t.co/0zzvGiUVIc

bigomics
bigomics bigomics @bigomics ·
16 Mar

Maximize the accuracy of your #RNAseq results with the right #normalization techniques. In our latest blog post, we break down the different normalization stages and methods to help you master your next RNA-seq analysis ➡️https://eu1.hubs.ly/H03cgQG0

#transcriptomics #bioinformatics

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bigomics bigomics @bigomics ·
15 Mar

Day 1 of RNA Leaders 2023! Make sure to swing by booth #25 to meet us and discover how Omics Playground can accelerate your RNA research 🧬

Learn more about Omics Playground at https://eu1.hubs.ly/H03bHJ90

@LSXLeaders #RNALeaders #RNAseqdata #RNA #omicsdata #omicsdataanalysis

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